Peptide sequences as input

afllxxvii

New member
Hi,

I was wondering if it is possible to use a collection of peptides from for example proteomic analysis as an input for DIAMOND?
What would be a input file format? FASTA...

Cheers, Andrzej
 

Benjamin Buchfink

Administrator
Staff member
That would depend on the length, as Diamond does not work well for very short sequences.

The input file would have to be FASTA.
 
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